Adopt catalog references for all matching dependencies (#5889)

## Summary

Converts 81 package dependencies to use pnpm catalog references for
centralized version management.

## Changes

- **What**: All dependencies matching catalog versions now use
`catalog:` references
- **Dependencies**: axios catalog entry corrected from ^1.11.0 to ^1.8.2
- Also removes a redundant knip config line

### Some things that shouldn't matter

- TypeScript was updated from ^5.4.5 to catalog reference (^5.9.2), but
the project was already resolving to 5.9.2 so this has no practical
impact.
- axios catalog version was corrected from ^1.11.0 back to ^1.8.2 to
match the main package version.
- Autoformatted LGraphNode.ts from another PR by running pnpm lint.
Oops.

knip.config.ts

@@ -20,7 +20,6 @@ const config: KnipConfig = {
       project: ['src/**/*.{js,ts}', '*.{js,ts,mts}']
     },
     'packages/registry-types': {
-      entry: ['src/comfyRegistryTypes.ts'],
       project: ['src/**/*.{js,ts}']
     }
   },