diff --git a/javascript/tagAutocomplete.js b/javascript/tagAutocomplete.js
index 8f4c54e..1e7a403 100644
--- a/javascript/tagAutocomplete.js
+++ b/javascript/tagAutocomplete.js
@@ -365,6 +365,8 @@ function updateSelectionStyle(textArea, newIndex, oldIndex) {
     }
 }
 
+var wcBasePath = "";
+var wcExtBasePath = "";
 var wildcardFiles = [];
 var wildcardExtFiles = [];
 var embeddings = [];
@@ -413,15 +415,15 @@ function autocomplete(textArea, prompt, fixedTag = null) {
         let wcFile = wcMatch[0][1];
         let wcWord = wcMatch[0][2];
 
-        let wcBasePath = "";
+        var basePath = "";
         if (wildcardExtFiles.includes(wcFile))
-            wcBasePath = "extensions/wildcards/wildcards";
+            basePath = wcExtBasePath;
         else if (wildcardFiles.includes(wcFile))
-            wcBasePath = "scripts/wildcards";
+            basePath = wcBasePath;
         else
             throw "No valid wildcard file found";
 
-        let wildcards = readFile(`file/${wcBasePath}/${wcFile}.txt`).split("\n")
+        let wildcards = readFile(`file/${basePath}/${wcFile}.txt`).split("\n")
                         .filter(x => x.trim().length > 0); // Remove empty lines
 
         results = wildcards.filter(x => (wcWord !== null && wcWord.length > 0) ? x.toLowerCase().includes(wcWord) : x) // Filter by tagword
@@ -432,7 +434,6 @@ function autocomplete(textArea, prompt, fixedTag = null) {
         if (tagword !== "__") {
             let lmb = (x) => x.toLowerCase().includes(tagword.replace("__", ""))
             tempResults = wildcardFiles.filter(lmb).concat(wildcardExtFiles.filter(lmb)) // Filter by tagword
-            
         } else {
             tempResults = wildcardFiles.concat(wildcardExtFiles);
         }
@@ -612,10 +613,15 @@ onUiUpdate(function () {
     // Load wildcards
     if (wildcardFiles.length === 0 && acConfig.useWildcards) {
         try {
-            wildcardFiles = readFile("file/tags/temp/wc.txt").split("\n")
+            let wcFileArr = readFile("file/tags/temp/wc.txt").split("\n");
+            wcBasePath = wcFileArr[0]; // First line should be the base path
+            wildcardFiles = wcFileArr.slice(1)
                 .filter(x => x.trim().length > 0) // Remove empty lines
                 .map(x => x.trim().replace(".txt", "")); // Remove file extension & newlines
-            wildcardExtFiles = readFile("file/tags/temp/wce.txt").split("\n")
+            
+            let wcExtFileArr = readFile("file/tags/temp/wce.txt").split("\n");
+            wcExtBasePath = wcExtFileArr[0]; // First line should be the base path
+            wildcardExtFiles = wcExtFileArr.slice(1)
                 .filter(x => x.trim().length > 0) // Remove empty lines
                 .map(x => x.trim().replace(".txt", "")); // Remove file extension & newlines
         } catch (e) {
diff --git a/scripts/tag_autocomplete_helper.py b/scripts/tag_autocomplete_helper.py
index 80afe3c..d6b89a2 100644
--- a/scripts/tag_autocomplete_helper.py
+++ b/scripts/tag_autocomplete_helper.py
@@ -6,12 +6,20 @@ from pathlib import Path
 # The path to the folder containing the wildcards and embeddings
 FILE_DIR = Path().absolute()
 WILDCARD_PATH = FILE_DIR.joinpath('scripts/wildcards')
-WILDCARD_EXT_PATH = FILE_DIR.joinpath('extensions/wildcards/wildcards')
 EMB_PATH = FILE_DIR.joinpath('embeddings')
+
+EXT_PATH = FILE_DIR.joinpath('extensions')
+
+def find_ext_wildcard_path():
+    """Returns the path to the extension wildcards folder"""
+    found = list(EXT_PATH.rglob('**/wildcards/'))[0]
+    return found
+
+WILDCARD_EXT_PATH = find_ext_wildcard_path()
+
 # The path to the temporary file
 TEMP_PATH = FILE_DIR.joinpath('tags/temp')
 
-
 def get_wildcards():
     """Returns a list of all wildcards. Works on nested folders."""
     wildcard_files = list(WILDCARD_PATH.rglob("*.txt"))
@@ -48,13 +56,13 @@ write_to_temp_file('emb.txt', [])
 
 # Write wildcards to wc.txt if found
 if WILDCARD_PATH.exists():
-    wildcards = get_wildcards()
+    wildcards = [WILDCARD_PATH.relative_to(FILE_DIR).as_posix()] + get_wildcards()
     if wildcards:
         write_to_temp_file('wc.txt', wildcards)
 
 # Write extension wildcards to wce.txt if found
 if WILDCARD_EXT_PATH.exists():
-    wildcards_ext = get_ext_wildcards()
+    wildcards_ext = [WILDCARD_EXT_PATH.relative_to(FILE_DIR).as_posix()] + get_ext_wildcards()
     if wildcards_ext:
         write_to_temp_file('wce.txt', wildcards_ext)