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0103ed11e8984f53e99edddfcb41e1c3f258770b
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373 Commits

Author SHA1 Message Date
Ralf W. Grosse-Kunstleve
0103ed11e8 Merge branch 'master' into sh_merge_master 2023-12-14 23:14:57 -08:00
dependabot[bot]
eeac2f4572 chore(deps): bump actions/upload-artifact from 3 to 4 (#4975) 
Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](https://github.com/actions/upload-artifact/compare/v3...v4)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-12-14 18:50:09 -08:00
dependabot[bot]
e8a43ea974 chore(deps): bump actions/download-artifact from 3 to 4 (#4976) 
Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/download-artifact/releases)
- [Commits](https://github.com/actions/download-artifact/compare/v3...v4)

---
updated-dependencies:
- dependency-name: actions/download-artifact
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-12-14 18:46:13 -08:00
Victor Stinner
dc477fac0e fix: Use PyObject_VisitManagedDict() of Python 3.13 (#4973) 
* fix: Use PyObject_VisitManagedDict() of Python 3.13

Use PyObject_VisitManagedDict() and PyObject_ClearManagedDict() in
pybind11_traverse() and pybind11_clear() on Python 3.13 and newer.

* Add Python 3.13 CI

* tests: don't get numpy/scipy on 3.13 yet

* ci: move 3.13 to upstream

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>

---------

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>
Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
 2023-12-14 18:42:55 -08:00
Pol Mesalles
daea1130b4 fix(cmake): upgrade maximum supported CMake version to 3.27 (#4786) 
* Upgrade maximum supported CMake version to 3.27 to fix warning with CMP0148 policy (#4785)

* Update `macos_brew_install_llvm` pipeline to use expected Python installation

* Fix `Python_EXECUTABLE` Cmake variable typo

* Apply suggestions from code review

* fix: use FindPython for CMake 3.18+ by default for pybind11's tests

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>

* tests: fix issues with finding Python

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>

* tests: also set executable on subdir tests

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>

* fix(cmake): correct logic for FindPython

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>

* Update ci.yml

* Revert "Update ci.yml"

This reverts commit 33798adf3f.

---------

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>
Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
 2023-12-14 14:36:45 -05:00
dependabot[bot]
68322895df chore(deps): bump actions/setup-python from 4 to 5 (#4965) 
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4 to 5.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](https://github.com/actions/setup-python/compare/v4...v5)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-12-06 21:09:08 -08:00
Ralf W. Grosse-Kunstleve
d373f1641e Tracking ci.yml changes from master. 2023-12-01 22:00:51 -08:00
Ralf W. Grosse-Kunstleve
686783b3da Merge branch 'master' into sh_merge_master 2023-12-01 21:59:50 -08:00
dependabot[bot]
4bb6163b4f chore(deps): bump deadsnakes/action from 3.0.1 to 3.1.0 (#4951) 
Bumps [deadsnakes/action](https://github.com/deadsnakes/action) from 3.0.1 to 3.1.0.
- [Release notes](https://github.com/deadsnakes/action/releases)
- [Commits](https://github.com/deadsnakes/action/compare/v3.0.1...v3.1.0)

---
updated-dependencies:
- dependency-name: deadsnakes/action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-11-27 15:37:43 -08:00
Ralf W. Grosse-Kunstleve
4c5b88a557 Tracking ci.yml changes from master. 2023-10-20 00:00:54 -07:00
Ralf W. Grosse-Kunstleve
b272af80a5 Merge branch 'master' into sh_merge_master 2023-10-20 00:00:26 -07:00
Ralf W. Grosse-Kunstleve
7969049de4 Comment out failing job, with link to #4889 (#4890) 2023-10-19 23:12:37 -07:00
Ralf W. Grosse-Kunstleve
901586943f Tracking ci.yml changes from master. 2023-10-11 21:10:22 -07:00
Ralf W. Grosse-Kunstleve
2c88356284 Merge branch 'master' into sh_merge_master 2023-10-11 21:07:36 -07:00
dependabot[bot]
6c77208561 chore(deps): bump seanmiddleditch/gha-setup-ninja from 3 to 4 (#4875) 
Bumps [seanmiddleditch/gha-setup-ninja](https://github.com/seanmiddleditch/gha-setup-ninja) from 3 to 4.
- [Release notes](https://github.com/seanmiddleditch/gha-setup-ninja/releases)
- [Commits](https://github.com/seanmiddleditch/gha-setup-ninja/compare/v3...v4)

---
updated-dependencies:
- dependency-name: seanmiddleditch/gha-setup-ninja
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-10-05 21:21:22 -07:00
Ralf W. Grosse-Kunstleve
7953d19a7c Merge branch 'master' into sh_merge_master 2023-10-03 22:45:09 -07:00
pre-commit-ci[bot]
2b2e4ca4a3 chore(deps): update pre-commit hooks (#4868) 
* chore(deps): update pre-commit hooks

updates:
- [github.com/psf/black-pre-commit-mirror: 23.7.0 → 23.9.1](https://github.com/psf/black-pre-commit-mirror/compare/23.7.0...23.9.1)
- [github.com/astral-sh/ruff-pre-commit: v0.0.287 → v0.0.292](https://github.com/astral-sh/ruff-pre-commit/compare/v0.0.287...v0.0.292)
- [github.com/codespell-project/codespell: v2.2.5 → v2.2.6](https://github.com/codespell-project/codespell/compare/v2.2.5...v2.2.6)
- [github.com/shellcheck-py/shellcheck-py: v0.9.0.5 → v0.9.0.6](https://github.com/shellcheck-py/shellcheck-py/compare/v0.9.0.5...v0.9.0.6)
- [github.com/PyCQA/pylint: v3.0.0a7 → v3.0.0](https://github.com/PyCQA/pylint/compare/v3.0.0a7...v3.0.0)

* Update .pre-commit-config.yaml

* style: pre-commit fixes

* Update .pre-commit-config.yaml

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
 2023-10-03 13:13:44 -04:00
Ralf W. Grosse-Kunstleve
9110b7665e Tracking ci.yml changes from master. 2023-09-10 10:50:36 -07:00
Ralf W. Grosse-Kunstleve
35b26794ec Merge branch 'master' into sh_merge_master 2023-09-10 10:49:38 -07:00
dependabot[bot]
4a2f7e4681 chore(deps): bump actions/checkout from 1 to 4 (#4836) 
* chore(deps): bump actions/checkout from 1 to 4

Bumps [actions/checkout](https://github.com/actions/checkout) from 1 to 4.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](https://github.com/actions/checkout/compare/v1...v4)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>

* Update .github/workflows/ci.yml

* actions/checkout@v1 for centos:7

* Fix oversight: centos:7 actually works with actions/checkout@v3

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
Co-authored-by: Ralf W. Grosse-Kunstleve <rwgk@google.com>
 2023-09-06 15:57:18 -04:00
Ralf W. Grosse-Kunstleve
b9e956b002 Tracking ci.yml changes from master. 2023-08-07 21:03:46 -07:00
Ralf W. Grosse-Kunstleve
6f702e7f0e Merge branch 'master' into smart_holder 2023-08-07 20:59:51 -07:00
Axel Huebl
824dc27a01 CI: Reenable an NVHPC Test (#4764) 
Update from CentOS to Ubuntu and to a recent version
of NVHPC (former: PGI).

Co-authored-by: Ralf W. Grosse-Kunstleve <rwgk@google.com>
 2023-08-04 11:17:33 -07:00
Ralf W. Grosse-Kunstleve
fc9de040aa Tracking ci.yml changes from master. 2023-08-03 22:54:55 -07:00
Ralf W. Grosse-Kunstleve
7b62184cd2 Merge branch 'master' into sh_merge_master 2023-08-03 22:53:08 -07:00
Ralf W. Grosse-Kunstleve
17b614303f clang 17 compatibility fixes (#4767) 
* Copy clang 17 compatibility fixes from PR #4762 to a separate PR.

* Add gcc:13 C++20

* Add silkeh/clang:16-bullseye C++20
 2023-08-03 13:36:29 -07:00
Ralf W. Grosse-Kunstleve
fc2b9226b0 Tracking ci.yml changes from master. 2023-07-12 13:24:25 -07:00
Ralf W. Grosse-Kunstleve
9319f4ae75 Merge branch 'master' into sh_merge_master 2023-07-12 13:23:42 -07:00
Henry Schreiner
2e5f5c4cf8 fix: support CMake 3.27, drop 3.4 (#4719) 
* fix: support CMake 3.27, drop 3.4

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>

* Update upgrade.rst

* Update upgrade.rst

* Update upgrade.rst

---------

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>
 2023-07-12 13:10:24 -05:00
dependabot[bot]
b2732c6e1a chore(deps): bump pypa/gh-action-pypi-publish from 1.8.6 to 1.8.7 (#4718) 
* chore(deps): bump pypa/gh-action-pypi-publish from 1.8.6 to 1.8.7

Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.6 to 1.8.7.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.8.6...v1.8.7)

---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>

* Apply suggestions from code review

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
 2023-07-12 08:55:18 -07:00
Ralf W. Grosse-Kunstleve
782b6281a2 Drop PyPy 3.7 from GitHub Actions (ci.yml) (#4728) 
* Remove `pypy-3.7` from ci.yml

* Update .github/workflows/ci.yml

---------

Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
 2023-07-09 09:40:47 -07:00
Henry Schreiner
5ccb9e412d chore: ruff moved to astral-sh (#4726) 
* chore: ruff moved to astral-sh

Committed via https://github.com/asottile/all-repos

* ci: bump CUDA version
 2023-07-04 08:38:14 -04:00
Ralf W. Grosse-Kunstleve
ddb677b5ea Tracking ci.yml changes from master. 2023-06-27 15:11:55 -07:00
Ralf W. Grosse-Kunstleve
3a5d27e1f0 Merge branch 'master' into sh_merge_master 2023-06-27 15:11:06 -07:00
Ralf W. Grosse-Kunstleve
e10da79b6e Undo ci.yml gcc10 workaround after docker-library/gcc#95 was resolved. (#4717) 
The gcc10 workaround was introduced with PR #4705.
 2023-06-24 12:12:35 -07:00
Henry Schreiner
bc1bcf7c05 chore: 3.12 + cleanup (#4713) 
Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>
 2023-06-21 13:25:10 -04:00
Ralf W. Grosse-Kunstleve
4a52027a51 Tracking ci.yml changes from master. 2023-06-17 07:15:57 -07:00
Ralf W. Grosse-Kunstleve
eb510d5131 Merge branch 'master' into sh_merge_master 2023-06-17 07:13:12 -07:00
Ralf W. Grosse-Kunstleve
849322806c Systematically add PIP_BREAK_SYSTEM_PACKAGES to all .yml files from which pip is called. (#4705) 
* Systematically add PIP_BREAK_SYSTEM_PACKAGES to all .yml files from which pip is called.

* Try gcc:10-bullseye (because gcc:10 is broken: https://github.com/docker-library/gcc/issues/95)

* bug fix (matrix did not work as hoped)
 2023-06-17 07:02:23 -07:00
Ralf W. Grosse-Kunstleve
99115ef50f Tracking ci.yml changes from master. 2023-06-10 10:17:29 -07:00
Ralf W. Grosse-Kunstleve
7f4ea30240 Merge branch 'master' into sh_merge_master 2023-06-10 10:16:11 -07:00
Ralf W. Grosse-Kunstleve
0e43fcc75e Python 3.12b2 testing (#4695) 
* Uncomment `Interface test` sections (test_embed)

* fix: setuptools has been removed from default installs in 3.12

---------

Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
 2023-06-10 10:14:08 -07:00
Ralf W. Grosse-Kunstleve
0843514cb5 Tracking ci.yml changes from master. 2023-06-07 13:51:24 -07:00
Ralf W. Grosse-Kunstleve
6a567a30fd Merge branch 'master' into sh_merge_master 2023-06-07 13:50:35 -07:00
dependabot[bot]
c679a92095 chore(deps): bump deadsnakes/action from 3.0.0 to 3.0.1 (#4687) 
Bumps [deadsnakes/action](https://github.com/deadsnakes/action) from 3.0.0 to 3.0.1.
- [Release notes](https://github.com/deadsnakes/action/releases)
- [Commits](https://github.com/deadsnakes/action/compare/v3.0.0...v3.0.1)

---
updated-dependencies:
- dependency-name: deadsnakes/action
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Ralf W. Grosse-Kunstleve <rwgk@google.com>
 2023-06-07 13:49:14 -07:00
Ralf W. Grosse-Kunstleve
29487dee8f Disable 🐍 3 • CentOS7 / PGI 22.9 • x64 (#4691) 2023-06-07 12:00:37 -07:00
Ralf W. Grosse-Kunstleve
0c0abc9552 Tracking ci.yml changes from master. 2023-05-16 07:56:40 -07:00
Ralf W. Grosse-Kunstleve
6acda67f62 Merge branch 'master' into sh_merge_master 2023-05-16 07:55:38 -07:00
Joyce
d72ffb448c ci: set minimal permissions to github workflows (#4665) 
* set ci.yml minimal permissions

Signed-off-by: Joyce <joycebrum@google.com>

* set configure.yml minimal permissions

Signed-off-by: Joyce <joycebrum@google.com>

* set format.yml minimal permissions

Signed-off-by: Joyce <joycebrum@google.com>

* set pip.yml minimal permissions

Signed-off-by: Joyce <joycebrum@google.com>

* set upstream.yml minimal permissions

Signed-off-by: Joyce <joycebrum@google.com>

* set labeler.yml minimal permissions

Signed-off-by: Joyce <joycebrum@google.com>

* Update ci.yml to read all

Signed-off-by: Joyce <joycebrum@google.com>

* test labeler.yml

Signed-off-by: Joyce <joycebrum@google.com>

* restore the if at labeler.yml

Signed-off-by: Joyce <joycebrum@google.com>

---------

Signed-off-by: Joyce <joycebrum@google.com>
 2023-05-15 13:02:25 -04:00
Ralf W. Grosse-Kunstleve
9651d3bd43 Merge branch 'master' into sh_merge_master 2023-05-04 22:44:29 -07:00